Review Comment:
The revised manuscript addresses all the the issues raised in my previous review. The authors have improved the manuscript and extended the taxonomic model satisfactorily, providing a relevant contribution on its field.
The readability of the paper would strongly benefit from proof-reading by a native English speaker.
Below are some minor remarks for further enhancement of the quality of the paper.
Minor remarks
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Page 3, paragraph 4: "likability" -> "linkability"
Page 3, paragraph 4 - If you cite a reference using author name(s) and the reference has more than one author, list them all or use "et al.": "Jones -> "Jones et al.", "Schulz -> "Schulz et al.", "Flouris" -> "Flouris and Meghini" (page 6)
Page 3-4 - Split long text paragraphs to improve readability.
Page 4, paragraph 1: "TaxMeOn [6] used human-readable URIs for taxonomic checklists and local identifiers." - TaxMeOn does not specify the format of the URIs used for data instances (taxa, scientific names, etc.). The URIs of the TaxMeOn schema itself (classes, properties) itself are human-readable which is the standard way in RDF schemas.
Page 4, paragraph 1: "gab" -> "gap"
Page 6, Simple Nomial Entity: "In this research, when taxonomy is accepted in a given timeframe, it is considered as a taxon concept, otherwise it is viewed as a name." - This sentence is hard to understand, please clarify. Should "taxonomy" -> "taxon"?
Page 7, RDF listing - Why do you use dct:identifier for referring to uBio LSID? Doesn't the LSID identify the uBio's conception of the taxon and not your dataset's? If so, why not use owl:sameAs as with links to other external datasets (GBIF, LODAC)? (LSID is also a URI, though not an HTTP URI.)
Page 7, symbol definitions: "(tax) is an instance of a taxon concept" - I didn't notice the use of this symbol in any of the figures. If this is the case, the definition should be removed.
Page 9, paragraph 1 & Fig. 4 - The text states: "at time t2, Buidae is merged into Audiae", but in the Fig. 4 (if I interpret it correctly) the merge happens at time t1. If I've understood the model correctly, an event doesn't have an end time in case the outcome of the event (its changes) is still valid. So is the end time of the event relevant in this scenario?
Page 12, subsection 3.6.1: "Reusing CKA Framwork" -> "Reusing CKA Framework"
Page 12, subsection 3.6.1 - The text of this subsection could be moved to subsection 3.6.5 as they discuss same topic.
Page 13, RDF listing - Remove the empty line from the definition of ex:event1999 (line 6).
Page 13, RDF listing: "cka:cause" -> "cka:effect"
Page 14, paragraph 2: "skos:closeMatch" -> "skos:exactMatch"
Page 18, paragraph 1 - In URL format "http://[ltk_domain]/ltk-service/context?concept=[concept]&time=[time_point]", "time" -> "date"
Page 18, subsection 5.1: "Caligula boisduvalii falax" - Should "falax" -> "fallax"?
Page 18, subsection 5.1: "its two subspecies boisduvalii and jonasii were raised into two distinct genus" - Boisduvalii is not a subspecies, do you mean fallax?
Page 18, subsection 5.1: "its two subspecies boisduvalii and jonasii were raised into two distinct genus" - "genus" -> "species"
Page 19, section 6: "We discuss the values of our approach from four perspectives: knowledge representation, user engagement, system integration, and limitation." - "Limitation" as in "limitation of our approach" seems like a negative thing, maybe the expression could be changed to some positive/neutral one.
Page 21, subsection 6.1.4: "and the second part contains the event-centric model" - "second" -> "third"
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